Posters presented at  IWGD 2005

Algorithm of selection of clones contend unique genes in partial genome for analyses in Microarray
Mauricio E Cant�o, Jo�o E Ferreira, Eliana G M Lemos
IME-USP, S�o Paulo,
FCAV, UNESP, Jaboticabal, SP

BioNotes – A Sequence Annotation System 
Melissa Lemos, Luiz Fernando Bessa Seibel, Jos� Ant�nio Fernandes de Macedo, Antonio B. de Miranda, Marcelo Bertalan Quintanilha dos Santos, Orlando Martins, Paulo Cavalcanti Ferreira
DI, PUC-Rio, Rio de Janeiro, Brazil
Laboratory for Functional Genomics and Bioinformatics, Fiocruz, Rio de Janeiro, Brazil
Institute of Medical Biochemist, UFRJ, Rio de Janeiro, Brazil

Bioinformatics scientific workflows: combining databases, AI and Web services
Luciano Digiampietri, Jos� P�rez-Alc�zar, Claudia Bauzer Medeiros and Jo�o Carlos Setubal
Institute of Computing, Unicamp, Campinas, SP, Brazil 
EACH, USP S�o Paulo, SP, Brazil
Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA, USA

A Multiagent System to Help Manual Annotation on Genome Sequencing Projects
Richardson S. Lima, C�lia G. Ralha, Maria Em�lia M. T. Walter and  Marcelo M. Br�gido
Computer Science Department, UnB
Biology Institute, UnB

Mapping Molecular Geometry Problems into Pseudo-Boolean Constraints
Priscila M. V. Lima, Glaucia C. Pereira, M. Mariela M. Morveli Espinoza, Felipe M. G. Fran�a and Carlile C. Lavor
NCE/Instituto de Matem�tica – UFRJ, Brazil
COPPE– UFRJ, Brazil
Departamento de Matem�tica Aplicada, IMECC, UNICAMP, Brazil

Managing Annotation Notification and Scientific Workflow Execution in Genomic Databases
Ana Carolina Almeida, Fabr�cio N. da Silva, Ricardo Choren, Maria Claudia Cavalcanti
Departamento de Engenharia de Sistemas – Instituto Militar de Engenharia (IME), Rio de Janeiro

The BioPAU� GIGA Project : A Portal for Molecular Dynamics Using Grid Environment
Patr�cia M. Barros,  Eduardo Hill, Allan Wilter, Fabr�cio Silva, Carla Osthoff, Laurent E. Dardenne and Pedro G. Pascutti
LNCC, Laborat�rio Nacional de Computa��o Cient�fica,Petr�polis, Brazil
INPE, Instituto Nacional de Pesquisas Espaciais, S�o Jos� dos Campos, Brazil
IBCCF, Instituto de Biof�sica Carlos Chagas Filho,UFRJ, Rio de Janeiro, Brazil
Unisantos, Santos, Brazil

GAEVAL: An Evaluation of Gene Annotation Integrity
Shannon D Schlueter1, Matthew D. Wilkerson1, and Volker Brendel1,2
1Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA
50011-3260, USA
2Department of Statistics, Iowa State University, Ames, IA 50011-3260, USA

BioDAMS – A Bioinformatics Data Analysis and Management System
Melissa Lemos, Marco Antonio Casanova, Luiz Fernando Bessa Seibel, Antonio B. de Miranda
Department of Informatics, PUC-Rio, Rio de Janeiro, Brazil
Laboratory for Functional Genomics and Bioinformatics, Fiocruz, Rio de Janeiro, Brazil

Building Consistent Pathway/Genome Databases from Annotated Genomes using Pathway Tools
Luismar Marques Porto* and Artiva Maria Goudel
Genomic Engineering Group
Integrated Technologies Laboratory – InteLAB
Chemical and Food Engineering Department
Federal University of Santa Catarina – UFSC, Florian�polis, SC, Brazil

GEniS – An Integrative Genomic Engineering Information System
Claudimir Antonio Carminatti, Derce de Oliveira Souza Recouvreux,
Itamar Leite de Oliveira, Andr� Oliveira de Souza Lima, Luismar Marques Porto,*
Genomic Engineering Group
1Integrated Technologies Laboratory – InteLAB
Chemical and Food Engineering Department
Federal University of Santa Catarina – UFSC, Florian�polis, SC, Brazil
2Centro de Ci�ncias Tecnol�gicas da Terra e do Mar – UNIVALI, Itaja�, SC, Brazil

SCgenet – Santa Catarina State Genomic Engineering Network: Sharing Data, Linking Projects, and Integrating People
Luismar Marques Porto,Itamar Leite de Oliveira, Claudimir Antonio Carminatti, Andr� Luis Rodrigues, Derce de Oliveira Souza Recouvreux, Regina Vasconcellos Ant�nio, Andr� Oliveira de Souza Lima
Chemical and Food Engineering Department, – UFSC, Florian�polis, SC;
Biochemistry Department– UFSC, Florian�polis, SC;
Centro de Ci�ncias Tecnol�gicas da Terra e do Mar – UNIVALI, Itaja�, SC, Brazil

On Integrating Biological Databases by a Semantic Web Approach
Diogo Fernando Veiga1, Pedro de Stege Cecconello, Itamar Leite de Oliveira,
Jos� Eduardo de Lucca, Luismar Marques Porto
Genomic Engineering Group, Integrated Technologies Laboratory – InteLAB
Chemical and Food Engineering Department,
Informatics and Statistics Department
Federal University of Santa Catarina – UFSC, Florian�polis, SC, Brazil

GARSA Next Generation: Integration of Ontology-based tools (GO, ComGO)
Glauber Wagner, Pablo Mendes, Edmundo C. Grisard, Maria Claudia Reis Cavalcanti, Linair Campos, Maria Luiza Machado Campos, and Alberto M. R. D�vila.
Dept. de  Bioqu�mica e Biologia Molecular/ IOC /  FIOCRUZ
Dept. de Microbiologia e Parasitologia / CCB / UFSC
IME
NCE / UFRJ

Functional Analyses of Trypanosomatids Hypothetical Proteins
Igor S. Cestari1, Nicolaas J. Haver1, Patr�cia Fampa1, Ingrid Evans-Osses1, Anissa Daliry1, Shayje Mogami1, Nicolas Marchon1, Adriano B. Silva2 and Marcel I. Ramirez1*
Instituto Oswaldo Cruz (IOC/FIOCRUZ), Departamento de Bioqu�mica e Biologia Molecular, Av. Brasil, 4365, 21045-900, Rio de Janeiro-RJ, Brazil, Tel: (21) 3865-8252, Fax: (21) 2590-3495.
Universidade Federal de Minas Gerais (UFMG) - Instituto de Ci�ncias Biol�gicas – Departamento de Bioqu�mica e Imunologia, Av. Ant�nio Carlos, 6627, Caixa Postal 286 - CEP: 31270-901, Belo Horizonte, MG,

Remote Homology Detection With Hmms and Structural Issues
Bernardes, J. Zaverucha, G. Santos Costa, V. and D�vila, A.M.R.
COPPE/Sistemas – Universidade Federal do Rio de Janeiro
FIOCRUZ – Funda��o Oswaldo Cruz

Detection of Mobile Genetics Elements (Mges) Using Hmms: Towards a Web-Based System aor Mges Comparative Analyses
Oca�a, K and D�vila, A.M.R.
DBBM/IOC/FUNDA��O OSWALDO CRUZ

Genomic Resources Manipulation and Analysis Supported by Enhanced Ontologies
Maria Luiza M. Campos, Linair Maria Campos, Pablo N. Mendes, Alberto D�vila,
Maria Luiza A. Campos, Luana Sales
IM-NCE/UFRJ
UGA/USA
FIOCRUZ
DCI/UFF