Posters presented at  IWGD 2005

Algorithm of selection of clones contend unique genes in partial genome for analyses in Microarray
Mauricio E Cantão, João E Ferreira, Eliana G M Lemos
IME-USP, São Paulo,
FCAV, UNESP, Jaboticabal, SP

BioNotes – A Sequence Annotation System 
Melissa Lemos, Luiz Fernando Bessa Seibel, José Antônio Fernandes de Macedo, Antonio B. de Miranda, Marcelo Bertalan Quintanilha dos Santos, Orlando Martins, Paulo Cavalcanti Ferreira
DI, PUC-Rio, Rio de Janeiro, Brazil
Laboratory for Functional Genomics and Bioinformatics, Fiocruz, Rio de Janeiro, Brazil
Institute of Medical Biochemist, UFRJ, Rio de Janeiro, Brazil

Bioinformatics scientific workflows: combining databases, AI and Web services
Luciano Digiampietri, José Pérez-Alcázar, Claudia Bauzer Medeiros and João Carlos Setubal
Institute of Computing, Unicamp, Campinas, SP, Brazil 
EACH, USP São Paulo, SP, Brazil
Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA, USA

A Multiagent System to Help Manual Annotation on Genome Sequencing Projects
Richardson S. Lima, Célia G. Ralha, Maria Emília M. T. Walter and  Marcelo M. Brígido
Computer Science Department, UnB
Biology Institute, UnB

Mapping Molecular Geometry Problems into Pseudo-Boolean Constraints

Priscila M. V. Lima, Glaucia C. Pereira, M. Mariela M. Morveli Espinoza, Felipe M. G. França and Carlile C. Lavor
NCE/Instituto de Matemática – UFRJ, Brazil
COPPE– UFRJ, Brazil
Departamento de Matemática Aplicada, IMECC, UNICAMP, Brazil

Managing Annotation Notification and Scientific Workflow Execution in Genomic Databases
Ana Carolina Almeida, Fabrício N. da Silva, Ricardo Choren, Maria Claudia Cavalcanti
Departamento de Engenharia de Sistemas – Instituto Militar de Engenharia (IME), Rio de Janeiro

The BioPAUÁ GIGA Project : A Portal for Molecular Dynamics Using Grid Environment
Patrícia M. Barros,  Eduardo Hill, Allan Wilter, Fabrício Silva, Carla Osthoff, Laurent E. Dardenne and Pedro G. Pascutti
LNCC, Laboratório Nacional de Computação Científica,Petrópolis, Brazil
INPE, Instituto Nacional de Pesquisas Espaciais, São José dos Campos, Brazil
IBCCF, Instituto de Biofísica Carlos Chagas Filho,UFRJ, Rio de Janeiro, Brazil
Unisantos, Santos, Brazil

GAEVAL: An Evaluation of Gene Annotation Integrity
Shannon D Schlueter1, Matthew D. Wilkerson1, and Volker Brendel1,2
1Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA
50011-3260, USA
2Department of Statistics, Iowa State University, Ames, IA 50011-3260, USA

BioDAMS – A Bioinformatics Data Analysis and Management System

Melissa Lemos, Marco Antonio Casanova, Luiz Fernando Bessa Seibel, Antonio B. de Miranda
Department of Informatics, PUC-Rio, Rio de Janeiro, Brazil
Laboratory for Functional Genomics and Bioinformatics, Fiocruz, Rio de Janeiro, Brazil

Building Consistent Pathway/Genome Databases from Annotated Genomes using Pathway Tools
Luismar Marques Porto* and Artiva Maria Goudel
Genomic Engineering Group
Integrated Technologies Laboratory – InteLAB
Chemical and Food Engineering Department
Federal University of Santa Catarina – UFSC, Florianópolis, SC, Brazil

GEniS – An Integrative Genomic Engineering Information System
Claudimir Antonio Carminatti, Derce de Oliveira Souza Recouvreux,
Itamar Leite de Oliveira, André Oliveira de Souza Lima, Luismar Marques Porto,*
Genomic Engineering Group
1Integrated Technologies Laboratory – InteLAB
Chemical and Food Engineering Department
Federal University of Santa Catarina – UFSC, Florianópolis, SC, Brazil
2Centro de Ciências Tecnológicas da Terra e do Mar – UNIVALI, Itajaí, SC, Brazil

SCgenet – Santa Catarina State Genomic Engineering Network: Sharing Data, Linking Projects, and Integrating People

Luismar Marques Porto,Itamar Leite de Oliveira, Claudimir Antonio Carminatti, André Luis Rodrigues, Derce de Oliveira Souza Recouvreux, Regina Vasconcellos Antônio, André Oliveira de Souza Lima
Chemical and Food Engineering Department, – UFSC, Florianópolis, SC;
Biochemistry Department– UFSC, Florianópolis, SC;
Centro de Ciências Tecnológicas da Terra e do Mar – UNIVALI, Itajaí, SC, Brazil

On Integrating Biological Databases by a Semantic Web Approach
Diogo Fernando Veiga1, Pedro de Stege Cecconello, Itamar Leite de Oliveira,
José Eduardo de Lucca, Luismar Marques Porto
Genomic Engineering Group, Integrated Technologies Laboratory – InteLAB
Chemical and Food Engineering Department,
Informatics and Statistics Department
Federal University of Santa Catarina – UFSC, Florianópolis, SC, Brazil

GARSA Next Generation: Integration of Ontology-based tools (GO, ComGO)
Glauber Wagner, Pablo Mendes, Edmundo C. Grisard, Maria Claudia Reis Cavalcanti, Linair Campos, Maria Luiza Machado Campos, and Alberto M. R. Dávila.
Dept. de  Bioquímica e Biologia Molecular/ IOC /  FIOCRUZ
Dept. de Microbiologia e Parasitologia / CCB / UFSC
IME
NCE / UFRJ

Functional Analyses of Trypanosomatids Hypothetical Proteins
Igor S. Cestari1, Nicolaas J. Haver1, Patrícia Fampa1, Ingrid Evans-Osses1, Anissa Daliry1, Shayje Mogami1, Nicolas Marchon1, Adriano B. Silva2 and Marcel I. Ramirez1*
Instituto Oswaldo Cruz (IOC/FIOCRUZ), Departamento de Bioquímica e Biologia Molecular, Av. Brasil, 4365, 21045-900, Rio de Janeiro-RJ, Brazil, Tel: (21) 3865-8252, Fax: (21) 2590-3495.
Universidade Federal de Minas Gerais (UFMG) - Instituto de Ciências Biológicas – Departamento de Bioquímica e Imunologia, Av. Antônio Carlos, 6627, Caixa Postal 286 - CEP: 31270-901, Belo Horizonte, MG,

Remote Homology Detection With Hmms and Structural Issues
Bernardes, J. Zaverucha, G. Santos Costa, V. and Dávila, A.M.R.
COPPE/Sistemas – Universidade Federal do Rio de Janeiro
FIOCRUZ – Fundação Oswaldo Cruz

Detection of Mobile Genetics Elements (Mges) Using Hmms: Towards a Web-Based System aor Mges Comparative Analyses
Ocaña, K and Dávila, A.M.R.
DBBM/IOC/FUNDAÇÃO OSWALDO CRUZ

Genomic Resources Manipulation and Analysis Supported by Enhanced Ontologies

Maria Luiza M. Campos, Linair Maria Campos, Pablo N. Mendes, Alberto Dávila,
Maria Luiza A. Campos, Luana Sales
IM-NCE/UFRJ
UGA/USA
FIOCRUZ
DCI/UFF